Package TEES :: Package Utils :: Package STFormat :: Module STTools

Module STTools

Classes

Document

Annotation

Functions

getStatistics(documents, printStats=True, statSeparator='\n') source code

readTAnnotation(string, readScores=False)

source code

readStarAnnotation(string, proteins)

source code

readEvent(string, sitesAreArguments=False, readScores=False)

source code

readRAnnotation(string, readScores=False)

source code

readDependencyAnnotation(string)

source code

loadA1(filename)

source code

loadRelOrA2(filename, proteins, sitesAreArguments=False, readScores=False)

source code

loadText(filename)

source code

load(id, dir, loadA2=True, sitesAreArguments=False, a2Tag='a2', readScores=False) source code

loadSet(path, setName=None, level='a2', sitesAreArguments=False, a2Tag='a2', readScores=False) source code

writeSet(documents, output, resultFileTag='a2', debug=False, task=2, validate=True, writeScores=False) source code

getMaxId(annotations)

source code

updateIds(annotations, minId=0)

source code

writeTAnnotation(proteins, out, writeScores, idStart=0)

source code

getDuplicatesMapping(eventLines)

source code

writeEvents(events, out, counts, task, writeScores=False)

source code

write(id, dir, proteins, triggers, events, relations, resultFileTag='a2', counts=None, debug=False, task=2, writeScores=False) source code

package(sourceDir, outputFile, includeTags=['a2', 'a2.scores']) source code

Variables

__package__ = 'TEES.Utils.STFormat'