Package TEES :: Package Utils

Package Utils

source code

Supporting event detector components.

Utils module contains the various supporting classes used by the components of the event detection system.

Submodules

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TEES.Utils.CompareExamples
TEES.Utils.CompareFeatures
TEES.Utils.Connection
- TEES.Utils.Connection.ClusterConnection
- TEES.Utils.Connection.Connection
- TEES.Utils.Connection.LSFConnection
- TEES.Utils.Connection.PBSConnection
- TEES.Utils.Connection.SLURMConnection
- TEES.Utils.Connection.UnixConnection
TEES.Utils.Convert
- TEES.Utils.Convert.DDITools
- TEES.Utils.Convert.SubtiWiki
- TEES.Utils.Convert.convertBioNLP
- TEES.Utils.Convert.convertDDI
- TEES.Utils.Convert.processLPSN
TEES.Utils.DefaultSettings
TEES.Utils.DetectHeads
TEES.Utils.Download
TEES.Utils.ElementTreeUtils: Functions for easier use of cElementTree.
TEES.Utils.FindHeads
TEES.Utils.InteractionXML: Tools for working with interaction (and analysis) XML.
- TEES.Utils.InteractionXML.Catenate
- TEES.Utils.InteractionXML.CompareParse
- TEES.Utils.InteractionXML.ConvertPMC
- TEES.Utils.InteractionXML.CopyParse
- TEES.Utils.InteractionXML.CorpusElements
- TEES.Utils.InteractionXML.DeleteAttributes
- TEES.Utils.InteractionXML.DeleteElements
- TEES.Utils.InteractionXML.DivideSets
- TEES.Utils.InteractionXML.ExportParse
- TEES.Utils.InteractionXML.ExtendTriggers
- TEES.Utils.InteractionXML.FixAltOffsets
- TEES.Utils.InteractionXML.IDUtils
- TEES.Utils.InteractionXML.ListInteractors
- TEES.Utils.InteractionXML.MakeSubset
- TEES.Utils.InteractionXML.MapPhrases
- TEES.Utils.InteractionXML.MergeDuplicateEntities
- TEES.Utils.InteractionXML.MergeNamedEntityTypes
- TEES.Utils.InteractionXML.MergeParse
- TEES.Utils.InteractionXML.MixSets
- TEES.Utils.InteractionXML.ParseGraph: Program: Classes for working with parse graphs Date: Jan.
- TEES.Utils.InteractionXML.ParseStats
- TEES.Utils.InteractionXML.RecalculateIds
- TEES.Utils.InteractionXML.RemoveDuplicateDependencies
- TEES.Utils.InteractionXML.RemoveUnconnectedEntities
- TEES.Utils.InteractionXML.ResolveEPITriggerTypes
- TEES.Utils.InteractionXML.ResolveIdentityChains
- TEES.Utils.InteractionXML.SentenceElements
- TEES.Utils.InteractionXML.SplitMergedElements
- TEES.Utils.InteractionXML.Subset
TEES.Utils.Libraries: External programs.
- TEES.Utils.Libraries.PorterStemmer: Porter Stemming Algorithm This is the Porter stemming algorithm, ported to Python from the version coded up in ANSI C by the author.
- TEES.Utils.Libraries.combine: Combinations from multiple sequences
- TEES.Utils.Libraries.progressbar: Text progressbar library for python.
- TEES.Utils.Libraries.pstat: pstat.py module
- TEES.Utils.Libraries.stats: stats.py module
TEES.Utils.Menu
TEES.Utils.Parameters
TEES.Utils.ProgressCounter
TEES.Utils.ProteinNameSplitter
TEES.Utils.Range: Character offset tools.
TEES.Utils.Release
TEES.Utils.STFormat
- TEES.Utils.STFormat.Analyze
- TEES.Utils.STFormat.Compare
- TEES.Utils.STFormat.ConvertXML
- TEES.Utils.STFormat.Equiv
- TEES.Utils.STFormat.RoundTrip
- TEES.Utils.STFormat.STTools
- TEES.Utils.STFormat.Scores
- TEES.Utils.STFormat.Validate
TEES.Utils.Settings
TEES.Utils.Stream: Capture stdout or stderr messages to a log file
TEES.Utils.TableUtils
TEES.Utils.Timer

Variables

[hide private]

__package__ = None