Home
Trees
Indices
Help
Turku Event Extraction System
[
hide private
]
[
Module Hierarchy
|
Class Hierarchy
]
Module Hierarchy
TEES
:
Turku Event Extraction System.
TEES.Classifiers
:
Classifiers predict the class of an example.
TEES.Classifiers.AllCorrectClassifier
TEES.Classifiers.AllTrueClassifier
TEES.Classifiers.Classifier
:
Base class for classifiers
TEES.Classifiers.ExternalClassifier
TEES.Classifiers.SVMMultiClassClassifier
TEES.Classifiers.SVMMultiClassModelUtils
TEES.Core
:
Event Detector system central classes.
TEES.Core.DivideCorpus
:
Pseudorandomly distributed subsets
TEES.Core.DivideExamples
:
Pseudorandomly distributed subsets
TEES.Core.ExampleUtils
:
Tools for writing and reading classifier example files
TEES.Core.IdSet
:
Manages classification class and feature ids.
TEES.Core.Model
:
For storing the results of TEES training.
TEES.Core.RecallAdjust
:
Trade precision for recall
TEES.Core.SentenceGraph
:
Main class for representing a sentence
TEES.Core.SimpleGraph
:
For representing the event argument and dependency graphs.
TEES.Core.Split
:
Functions for dividing data into random sets.
TEES.Detectors
:
A high-level, object oriented interface to TEES.
TEES.Detectors.CODetector
TEES.Detectors.Detector
:
The base class for the object oriented interface.
TEES.Detectors.EdgeDetector
TEES.Detectors.EntityDetector
TEES.Detectors.EventDetector
TEES.Detectors.ModifierDetector
TEES.Detectors.Preprocessor
TEES.Detectors.SingleStageDetector
TEES.Detectors.StepSelector
TEES.Detectors.ToolChain
TEES.Detectors.UnmergingDetector
TEES.Evaluators
:
Evaluators for measuring classifier performance.
TEES.Evaluators.AveragingMultiClassEvaluator
:
For multi-class classifications
TEES.Evaluators.BinaryEvaluator
:
For two-class classification
TEES.Evaluators.BioNLP11GeniaTools
TEES.Evaluators.EvaluateInteractionXML
:
For comparing a predicted interaction XML against a gold standard
TEES.Evaluators.Evaluator
:
Base class for Evaluators
TEES.ExampleBuilders
:
Turn input data into machine learning examples.
TEES.ExampleBuilders.EdgeExampleBuilder
:
Edge Examples
TEES.ExampleBuilders.EntityExampleBuilder
:
Trigger examples
TEES.ExampleBuilders.ExampleBuilder
:
Base class for ExampleBuilders
TEES.ExampleBuilders.ExampleStats
TEES.ExampleBuilders.FeatureBuilders
:
Provide methods used by several ExampleBuilders
TEES.ExampleBuilders.FeatureBuilders.BacteriaRenamingFeatureBuilder
TEES.ExampleBuilders.FeatureBuilders.BioInferOntologyFeatureBuilder
:
BioInfer ontology based features
TEES.ExampleBuilders.FeatureBuilders.DrugFeatureBuilder
TEES.ExampleBuilders.FeatureBuilders.EVEXFeatureBuilder
:
EVEX Feature Builder
TEES.ExampleBuilders.FeatureBuilders.EdgeFeatureBuilder
:
Dependency edge features
TEES.ExampleBuilders.FeatureBuilders.EventFeatureBuilder
TEES.ExampleBuilders.FeatureBuilders.FeatureBuilder
:
Base class for FeatureBuilders
TEES.ExampleBuilders.FeatureBuilders.GiulianoFeatureBuilder
:
Giuliano Feature Builder
TEES.ExampleBuilders.FeatureBuilders.GraphKernelFeatureBuilder
TEES.ExampleBuilders.FeatureBuilders.MultiEdgeFeatureBuilder
:
Shortest path features
TEES.ExampleBuilders.FeatureBuilders.NameGazetteer
TEES.ExampleBuilders.FeatureBuilders.NodalidaFeatureBuilder
TEES.ExampleBuilders.FeatureBuilders.RELFeatureBuilder
TEES.ExampleBuilders.FeatureBuilders.RandomFeatureBuilder
TEES.ExampleBuilders.FeatureBuilders.TokenFeatureBuilder
TEES.ExampleBuilders.FeatureBuilders.TriggerFeatureBuilder
TEES.ExampleBuilders.FeatureBuilders.WordNetFeatureBuilder
TEES.ExampleBuilders.ModifierExampleBuilder
:
Speculation and negation examples
TEES.ExampleBuilders.PhraseTriggerExampleBuilder
:
Trigger examples
TEES.ExampleBuilders.UnmergingExampleBuilder
:
Edge Examples
TEES.ExampleWriters
:
ExampleWriters convert machine learning examples back to interaction xml.
TEES.ExampleWriters.BioTextExampleWriter
:
Wrapper for all interaction XML example writers
TEES.ExampleWriters.EdgeExampleWriter
TEES.ExampleWriters.EntityExampleWriter
TEES.ExampleWriters.ModifierExampleWriter
TEES.ExampleWriters.PhraseTriggerExampleWriter
TEES.ExampleWriters.SentenceExampleWriter
:
Base class for ExampleWriters working with interaction XML.
TEES.ExampleWriters.UnmergingExampleWriter
TEES.Tools
TEES.Tools.BANNER
TEES.Tools.BLLIPParser
TEES.Tools.GeniaEventsToSharedTask
TEES.Tools.GeniaSentenceSplitter
TEES.Tools.ProcessUtils
TEES.Tools.SentenceSplitter
TEES.Tools.StanfordParser
TEES.Tools.Tool
TEES.Utils
:
Supporting event detector components.
TEES.Utils.CompareExamples
TEES.Utils.CompareFeatures
TEES.Utils.Connection
TEES.Utils.Connection.ClusterConnection
TEES.Utils.Connection.Connection
TEES.Utils.Connection.LSFConnection
TEES.Utils.Connection.PBSConnection
TEES.Utils.Connection.SLURMConnection
TEES.Utils.Connection.UnixConnection
TEES.Utils.Convert
TEES.Utils.Convert.DDITools
TEES.Utils.Convert.SubtiWiki
TEES.Utils.Convert.convertBioNLP
TEES.Utils.Convert.convertDDI
TEES.Utils.Convert.processLPSN
TEES.Utils.DefaultSettings
TEES.Utils.DetectHeads
TEES.Utils.Download
TEES.Utils.ElementTreeUtils
:
Functions for easier use of cElementTree.
TEES.Utils.FindHeads
TEES.Utils.InteractionXML
:
Tools for working with interaction (and analysis) XML.
TEES.Utils.InteractionXML.Catenate
TEES.Utils.InteractionXML.CompareParse
TEES.Utils.InteractionXML.ConvertPMC
TEES.Utils.InteractionXML.CopyParse
TEES.Utils.InteractionXML.CorpusElements
TEES.Utils.InteractionXML.DeleteAttributes
TEES.Utils.InteractionXML.DeleteElements
TEES.Utils.InteractionXML.DivideSets
TEES.Utils.InteractionXML.ExportParse
TEES.Utils.InteractionXML.ExtendTriggers
TEES.Utils.InteractionXML.FixAltOffsets
TEES.Utils.InteractionXML.IDUtils
TEES.Utils.InteractionXML.ListInteractors
TEES.Utils.InteractionXML.MakeSubset
TEES.Utils.InteractionXML.MapPhrases
TEES.Utils.InteractionXML.MergeDuplicateEntities
TEES.Utils.InteractionXML.MergeNamedEntityTypes
TEES.Utils.InteractionXML.MergeParse
TEES.Utils.InteractionXML.MixSets
TEES.Utils.InteractionXML.ParseGraph
:
Program: Classes for working with parse graphs Date: Jan.
TEES.Utils.InteractionXML.ParseStats
TEES.Utils.InteractionXML.RecalculateIds
TEES.Utils.InteractionXML.RemoveDuplicateDependencies
TEES.Utils.InteractionXML.RemoveUnconnectedEntities
TEES.Utils.InteractionXML.ResolveEPITriggerTypes
TEES.Utils.InteractionXML.ResolveIdentityChains
TEES.Utils.InteractionXML.SentenceElements
TEES.Utils.InteractionXML.SplitMergedElements
TEES.Utils.InteractionXML.Subset
TEES.Utils.Libraries
:
External programs.
TEES.Utils.Libraries.PorterStemmer
:
Porter Stemming Algorithm This is the Porter stemming algorithm, ported to Python from the version coded up in ANSI C by the author.
TEES.Utils.Libraries.combine
:
Combinations from multiple sequences
TEES.Utils.Libraries.progressbar
:
Text progressbar library for python.
TEES.Utils.Libraries.pstat
:
pstat.py module
TEES.Utils.Libraries.stats
:
stats.py module
TEES.Utils.Menu
TEES.Utils.Parameters
TEES.Utils.ProgressCounter
TEES.Utils.ProteinNameSplitter
TEES.Utils.Range
:
Character offset tools.
TEES.Utils.Release
TEES.Utils.STFormat
TEES.Utils.STFormat.Analyze
TEES.Utils.STFormat.Compare
TEES.Utils.STFormat.ConvertXML
TEES.Utils.STFormat.Equiv
TEES.Utils.STFormat.RoundTrip
TEES.Utils.STFormat.STTools
TEES.Utils.STFormat.Scores
TEES.Utils.STFormat.Validate
TEES.Utils.Settings
TEES.Utils.Stream
:
Capture stdout or stderr messages to a log file
TEES.Utils.TableUtils
TEES.Utils.Timer
TEES.batch
:
Process a large number of input files
TEES.classify
:
Detect events or relations from text.
TEES.configure
:
Configure TEES by installing data files and external components.
TEES.setup
TEES.train
:
Train a new model for event or relation detection.
Home
Trees
Indices
Help
Turku Event Extraction System
Generated by Epydoc 3.0.1 on Thu Jul 19 18:20:40 2012
http://epydoc.sourceforge.net