Package TEES :: Package Utils :: Module Settings

Module Settings

source code

Functions

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setLocal(variable, value, setVariable=True)

source code

Variables

[hide private]

pathname = '/home/jari/TEESLocalSettings.py'

tempURL = {'BANNER_COMPILED': 'https://github.com/downloads/jb...

tempEVALUATOR = {'BB': 'BioNLP-ST_2011_Bacteria_Biotopes_evalu...

URL = {'BANNER_COMPILED': 'https://github.com/downloads/jbjorn...

EVALUATOR = {'BB': 'BioNLP-ST_2011_Bacteria_Biotopes_evaluatio...

BABELFISH = 'connection=Unix : account=jari@wap-it.utu.fi : wo...

BANNER_DIR = '/home/jari/TEES_DATA/tools/BANNER'

BIONLP_EVALUATOR_DIR = '/home/jari/TEES_DATA/tools/evaluators'

BIONLP_EVALUATOR_GOLD_DIR = '/home/jari/TEES_DATA/tools/evalua...

BLLIP_PARSER_DIR = '/home/jari/TEES_DATA/tools/BLLIP/dmcc-blli...

CORPUS_DIR = '/home/jari/TEES_DATA/corpora'

DATAPATH = '/home/jari/TEES_DATA'

DRUG_BANK_XML = '/home/jari/TEES_DATA/resources/drugbank.xml'

GENIA_SENTENCE_SPLITTER_DIR = '/home/jari/TEES_DATA/tools/geni...

LOCAL = 'Unix'

LOCAL_REMOTE = 'connection=Unix : account=jari@localhost : wor...

LOUHI = 'connection=PBS : account=jakrbj@louhi.csc.fi : workdi...

MCCLOSKY_BIOPARSINGMODEL_DIR = '/home/jari/TEES_DATA/tools/BLL...

MODEL_DIR = '/home/jari/TEES_DATA/models'

RUBY_PATH = 'ruby'

STANFORD_PARSER_DIR = '/home/jari/TEES_DATA/tools/stanford-par...

SVM_MULTICLASS_DIR = '/home/jari/biotext/ComplexPPI/SVMMultiCl...

TEES_RESOURCES = '/home/jari/TEES_DATA/resources'

VUORI = 'connection=SLURM : account=jakrbj@vuori.csc.fi : work...

__package__ = 'TEES.Utils'

urlBase = 'http://labda.inf.uc3m.es/DDIExtraction2011/'

Variables Details

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tempURL

Value:

{'BANNER_COMPILED': 'https://github.com/downloads/jbjorne/TEES/BANNER-
svn-snapshot-120630.tar.gz',
 'BANNER_SOURCE': 'http://banner.svn.sourceforge.net/viewvc/banner/tru
nk/?view=tar',
 'BB_DEVEL': 'http://weaver.nlplab.org/~bionlp-st/BioNLP-ST/downloads/
files/BioNLP-ST_2011_Bacteria_Biotopes_dev_data_rev1.tar.gz',
 'BB_DEVEL_McCC': 'http://weaver.nlplab.org/~bionlp-st/BioNLP-ST/downl
oads/support-files/McCC-parses-BioNLP-ST_2011_Bacteria_Biotopes_dev_da
...

tempEVALUATOR

Value:

{'BB': 'BioNLP-ST_2011_Bacteria_Biotopes_evaluation_software',
 'BB-gold': 'BioNLP-ST_2011_Bacteria_Biotopes_dev_data_rev1.tar.gz',
 'BI': 'BioNLP-ST_2011_bacteria_interactions_evaluation_software',
 'BI-gold': 'BioNLP-ST_2011_bacteria_interactions_dev_data_rev1-remixe
d.tar.gz',
 'CO': 'CREvalPackage1.4',
 'CO-gold': 'BioNLP-ST_2011_coreference_development_data.tar.gz',
 'EPI': 'BioNLP-ST_2011_EPI-eval-tools',
...

URL

Value:

{'BANNER_COMPILED': 'https://github.com/downloads/jbjorne/TEES/BANNER-
svn-snapshot-120630.tar.gz',
 'BANNER_SOURCE': 'http://banner.svn.sourceforge.net/viewvc/banner/tru
nk/?view=tar',
 'BB_DEVEL': 'http://weaver.nlplab.org/~bionlp-st/BioNLP-ST/downloads/
files/BioNLP-ST_2011_Bacteria_Biotopes_dev_data_rev1.tar.gz',
 'BB_DEVEL_McCC': 'http://weaver.nlplab.org/~bionlp-st/BioNLP-ST/downl
oads/support-files/McCC-parses-BioNLP-ST_2011_Bacteria_Biotopes_dev_da
...

EVALUATOR

Value:

{'BB': 'BioNLP-ST_2011_Bacteria_Biotopes_evaluation_software',
 'BB-gold': 'BioNLP-ST_2011_Bacteria_Biotopes_dev_data_rev1.tar.gz',
 'BI': 'BioNLP-ST_2011_bacteria_interactions_evaluation_software',
 'BI-gold': 'BioNLP-ST_2011_bacteria_interactions_dev_data_rev1-remixe
d.tar.gz',
 'CO': 'CREvalPackage1.4',
 'CO-gold': 'BioNLP-ST_2011_coreference_development_data.tar.gz',
 'EPI': 'BioNLP-ST_2011_EPI-eval-tools',
...

BABELFISH

Value:

'connection=Unix : account=jari@wap-it.utu.fi : workdir=/home/jari/TEE
S_Connection/ : settings=/home/jari/TEESLocalSettings.py'

BIONLP_EVALUATOR_GOLD_DIR

Value:

'/home/jari/TEES_DATA/tools/evaluators/gold'

BLLIP_PARSER_DIR

Value:

'/home/jari/TEES_DATA/tools/BLLIP/dmcc-bllip-parser-c672258'

GENIA_SENTENCE_SPLITTER_DIR

Value:

'/home/jari/TEES_DATA/tools/geniass'

LOCAL_REMOTE

Value:

'connection=Unix : account=jari@localhost : workdir=/home/jari/TEES_Co
nnection/ : settings=/home/jari/TEESLocalSettings.py'

LOUHI

Value:

'connection=PBS : account=jakrbj@louhi.csc.fi : workdir=/wrk/jakrbj/TE
ES_Connection/ : settings=/v/users/jakrbj/TEESLocalSettings.py'

MCCLOSKY_BIOPARSINGMODEL_DIR

Value:

'/home/jari/TEES_DATA/tools/BLLIP/biomodel'

STANFORD_PARSER_DIR

Value:

'/home/jari/TEES_DATA/tools/stanford-parser-2012-03-09'

SVM_MULTICLASS_DIR

Value:

'/home/jari/biotext/ComplexPPI/SVMMultiClass'

VUORI

Value:

'connection=SLURM : account=jakrbj@vuori.csc.fi : workdir=/wrk/jakrbj/
TEES_Connection/ : settings=/v/users/jakrbj/TEESLocalSettings.py : mod
ules=python,ruby'